Even after shortening the pattern pieces for my shorter legs, I still spent a good 20 minutes trying to make the pattern pieces fit the fabric to no avail. Then I had a thought. This is an all-over pattern that looks good sideways as well as longitudinally, and it has no nap.
I opened up the fabric, folded it sideways, and voila, the pattern pieces fit just fine.
Anyway, this solved the problem and left me with about 11 inches of additional fabric. I suppose I could have requested even less fabric than the 2 yards.
My question now -- what would you do with a strip of flannel fabric 11 inches by 42 inches?
By the way, turning the fabric sideways worked for my fabric because I'm not very tall. After shortening the pattern to fit my legs, I had not quite an inch leeway in the length. The pattern pieces were about 40 inches from the top of the waist to the bottom of the leg. This would not work as well for someone needing longer pant legs.